![]() You can view the current library path(s) by running the following command in the R console in RStudio. Then, see where your default library currently lies. To address these issues, you will need to change the RStudio package library to a location for which you have access permissions.įirst, launch RStudio. Using the default install.packages command can result in a series of frustrating messages like this: ’lib = “”’ is not writable It is also common to need to install R packages, but users can encounter problems due to lacking administrator permissions on the computer on which they are working. Many users have R installed in a personal workspace, but want to install packages into a common area so that their entire team can use them and preserve version consistency. chooseBioCmirror()įor (i in 1:length(missing)) biocLite(missing)Īll done, now you can get back to cracking out R code.For private training for 3 or more people at your site or online. If you had any packages from BioConductor, you will need to reload those as well. Missing <- setdiff(installedpkgs, installedpkgs.new) Once you’ve got the new version up and running, reload the saved packages and re-install them from CRAN. Install the new version of R and let it do it’s thing.ģ. ![]() Save(installedpkgs, file="installed_old.rda")Ģ. Before you upgrade, build a temp file with all of your old packages. ![]() This work-flow is short, sweet, and cross-platform.ġ. However, this continues to be a popular post, so I have decided to keep it up. The installr package for Windows and the updateR package for OS X are particularly good. Since the first publication of this post, a couple of packages have emerged to automate this process. ![]()
0 Comments
Leave a Reply. |
Details
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |